Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1019KEGG: mex:Mext_1528 hypothetical protein. (222 aa)    
Predicted Functional Partners:
Bind_0344
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mex:Mext_0824 response regulator receiver.
  
 0.974
Bind_1983
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: rpc:RPC_1524 multi-sensor hybrid histidine kinase.
  
 0.970
Bind_3644
PFAM: response regulator receiver; KEGG: mex:Mext_3276 response regulator receiver.
  
 0.962
Bind_1021
PFAM: conserved hypothetical protein; KEGG: rpe:RPE_4288 uncharacterised conserved protein UCP033924.
 
     0.824
Bind_0588
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_4432 ATP-binding region ATPase domain protein.
  
 
 0.783
Bind_3038
PFAM: protein of unknown function DUF1153; KEGG: rpe:RPE_0964 protein of unknown function DUF1153.
  
    0.754
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.738
Bind_0917
KEGG: xau:Xaut_1414 hypothetical protein.
  
     0.731
Bind_0363
PFAM: protein of unknown function DUF214; KEGG: mex:Mext_2864 protein of unknown function DUF214.
  
     0.723
Bind_0268
KEGG: nwi:Nwi_0527 hypothetical protein.
  
     0.722
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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