Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1061Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_0013 putative transcriptional regulator. (155 aa)    
Predicted Functional Partners:
Bind_3475
KEGG: mex:Mext_1456 hypothetical protein.
  
     0.683
Bind_2842
TIGRFAM: conserved hypothetical membrane protein; KEGG: mex:Mext_1457 hypothetical protein.
  
     0.680
Bind_3383
PFAM: SmpA/OmlA domain protein; KEGG: rpa:RPA2737 hypothetical protein.
  
     0.671
Bind_3547
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpa:RPA4367 sensor histidine kinase.
  
     0.651
Bind_0051
KEGG: mex:Mext_1537 hypothetical protein.
  
     0.650
Bind_0431
PFAM: Methyltransferase type 11; KEGG: mex:Mext_2509 methyltransferase type 11.
  
     0.648
Bind_2939
PFAM: conserved hypothetical protein; KEGG: mex:Mext_2126 hypothetical protein.
  
     0.645
atpF2
H+transporting two-sector ATPase B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity).
  
     0.633
Bind_0222
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: rpc:RPC_0286 DNA polymerase III subunit delta.
  
     0.632
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.631
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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