Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lysSKEGG: xau:Xaut_2384 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family. (567 aa)    
Predicted Functional Partners:
Bind_0093
PFAM: protein of unknown function DUF1013; KEGG: azc:AZC_1470 hypothetical protein.
  
    0.766
Bind_0771
PFAM: protein of unknown function DUF1321; KEGG: mex:Mext_2662 protein of unknown function DUF1321.
  
     0.700
Bind_1066
PFAM: phospholipase/Carboxylesterase; KEGG: dge:Dgeo_0941 phospholipase/carboxylesterase.
       0.626
Bind_3111
PFAM: import inner membrane translocase subunit Tim44; KEGG: mex:Mext_1560 import inner membrane translocase subunit Tim44.
  
     0.599
Bind_1068
Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.573
atpF1
H+transporting two-sector ATPase B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
    0.571
Bind_0074
PFAM: helicase domain protein; KEGG: mex:Mext_4394 helicase domain protein.
  
     0.569
rpsD
RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.557
Bind_2497
KEGG: bbt:BBta_4248 hypothetical protein.
  
     0.553
Bind_3522
PFAM: thiamine monophosphate synthase; KEGG: rpe:RPE_4721 thiamine monophosphate synthase.
  
     0.536
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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