Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_1076PFAM: ABC-1 domain protein; KEGG: xau:Xaut_1153 ABC-1 domain protein. (453 aa)    
Predicted Functional Partners:
Bind_1257
PFAM: regulatory protein TetR; KEGG: mex:Mext_3768 putative transcriptional regulator, TetR family.
  
     0.763
Bind_2108
KEGG: mex:Mext_1623 glycosyl transferase group 1.
  
    0.504
Bind_1075
Methyltransferase type 12; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: rpe:RPE_0727 methyltransferase type 11.
       0.472
Bind_0544
PFAM: monooxygenase FAD-binding; KEGG: atc:AGR_L_226 hypothetical protein.
   
 0.440
Bind_0923
PFAM: monooxygenase FAD-binding; KEGG: nha:Nham_2584 monooxygenase, FAD-binding.
   
 0.440
Bind_1405
TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mex:Mext_3901 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family.
   
 0.440
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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