STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1105Putative transmembrane anti-sigma factor; KEGG: bbr:BB1303 hypothetical protein. (283 aa)    
Predicted Functional Partners:
Bind_1104
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_0228 RNA polymerase sigma factor, sigma-70 family.
 
 
 0.949
Bind_3263
PFAM: Secreted repeat of unknown function; KEGG: tbd:Tbd_1655 probable transmembrane protein.
 
     0.682
Bind_1189
KEGG: rpd:RPD_0468 hypothetical protein.
  
     0.636
Bind_2854
TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like.
  
     0.622
Bind_2305
KEGG: rpd:RPD_2987 hypothetical protein.
  
     0.617
Bind_2400
Periplasmic protein-like protein; KEGG: bbt:BBta_5203 hypothetical protein.
  
     0.556
Bind_2076
KEGG: mex:Mext_4786 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.552
Bind_2753
KEGG: dar:Daro_2929 hypothetical protein.
  
     0.546
Bind_0013
KEGG: mex:Mext_2985 hypothetical protein.
  
     0.492
Bind_2321
PFAM: protein of unknown function DUF1656; KEGG: rme:Rmet_4792 protein of unknown function DUF1656.
  
     0.485
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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