STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1118PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: ret:RHE_PF00140 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Bind_1119
PFAM: Uracil-DNA glycosylase superfamily; KEGG: aba:Acid345_4416 uracil-DNA glycosylase superfamily.
       0.778
Bind_0782
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein.
  
     0.760
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
 
    0.702
Bind_1189
KEGG: rpd:RPD_0468 hypothetical protein.
  
     0.665
Bind_2727
KEGG: ngo:NGO0506 hypothetical protein, putative phage associated protein.
  
     0.657
Bind_2770
KEGG: lmo:lmo1968 hypothetical protein.
  
     0.638
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
 
   
 0.617
Bind_0447
PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_2255 glycosyltransferases probably involved in cell wall biogenesis-like.
  
     0.607
Bind_2073
PFAM: TonB-dependent receptor plug; KEGG: sat:SYN_01058 TonB dependent receptor family.
  
     0.604
Bind_2513
KEGG: mpt:Mpe_A0156 hypothetical protein.
  
     0.602
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.