Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_1140PFAM: phosphoribosyltransferase; KEGG: nwi:Nwi_0385 phosphoribosyltransferase. (264 aa)    
Predicted Functional Partners:
Bind_3421
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: mex:Mext_3315 DNA protecting protein DprA.
 
 
 0.899
Bind_0565
KEGG: rpe:RPE_0360 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
  
 0.846
Bind_1411
PFAM: ComEC/Rec2-related protein; KEGG: mex:Mext_4682 ComEC/Rec2-related protein.
 
  
 0.827
Bind_1139
PFAM: aminotransferase class IV; KEGG: mex:Mext_3905 aminotransferase class IV.
       0.782
Bind_1958
KEGG: scl:sce7776 two-component hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.782
Bind_1137
TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: zmo:ZMO0113 para-aminobenzoate synthase component I.
       0.779
Bind_1138
TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mex:Mext_3906 glutamine amidotransferase of anthranilate synthase.
       0.779
Bind_0308
PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: xau:Xaut_0393 arogenate dehydrogenase.
   
    0.734
Bind_0594
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmt:PMT0108 ABC transporter, ATP binding protein.
   
    0.687
Bind_2898
PFAM: DNA repair protein RadC; KEGG: rpc:RPC_0575 DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.672
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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