Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1189KEGG: rpd:RPD_0468 hypothetical protein. (444 aa)    
Predicted Functional Partners:
Bind_0782
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein.
  
     0.767
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
  
     0.766
Bind_2770
KEGG: lmo:lmo1968 hypothetical protein.
  
     0.761
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
  
     0.757
Bind_2305
KEGG: rpd:RPD_2987 hypothetical protein.
  
     0.752
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
  
     0.752
Bind_2854
TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like.
  
     0.752
Bind_1008
KEGG: mex:Mext_2327 hypothetical protein.
  
     0.750
Bind_2727
KEGG: ngo:NGO0506 hypothetical protein, putative phage associated protein.
  
     0.750
Bind_3675
KEGG: xau:Xaut_4721 hypothetical protein.
  
     0.745
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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