Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1197KEGG: bra:BRADO2721 hypothetical protein; putative membrane protein; putative TolA family protein. (209 aa)    
Predicted Functional Partners:
Bind_1196
PFAM: OmpA/MotB domain protein; transport-associated; KEGG: bbt:BBta_0753 putative outer membrane protein with OmpA domain.
       0.794
Bind_2728
KEGG: rsq:Rsph17025_3714 hypothetical protein.
  
     0.586
Bind_2411
PFAM: conserved hypothetical protein; KEGG: mes:Meso_1416 conserved hypothetical protein 1620.
  
     0.569
Bind_3667
PFAM: GcrA cell cycle regulator; KEGG: xau:Xaut_1217 GcrA cell cycle regulator.
  
     0.539
nuoN
Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.
  
  
 0.526
Bind_1657
PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: ret:RHE_CH00450 hypothetical protein.
  
     0.516
Bind_0943
KEGG: mex:Mext_2247 hypothetical protein.
  
     0.490
nuoB
NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
    0.488
Bind_3311
KEGG: sme:SMc02769 hypothetical protein.
  
     0.474
Bind_0827
KEGG: bja:bll0464 hypothetical protein.
  
     0.464
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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