Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1205PFAM: RDD domain containing protein; KEGG: sme:SMc01765 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Bind_0927
KEGG: rpc:RPC_3143 hypothetical protein.
  
     0.749
Bind_0271
TolA protein; KEGG: bcs:BCAN_A1737 TolA protein.
  
     0.730
Bind_1307
PFAM: protein of unknown function DUF540; KEGG: mex:Mext_0573 protein of unknown function DUF540.
  
     0.713
Bind_0732
KEGG: azc:AZC_4244 hypothetical protein.
  
     0.703
Bind_1711
Hypothetical protein; KEGG: bbt:BBta_1762 putative exported protein of unknown function.
  
     0.701
Bind_2709
PFAM: Sporulation domain protein; KEGG: mex:Mext_3397 sporulation domain protein.
 
     0.695
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
 
     0.681
Bind_1070
KEGG: rpd:RPD_0792 hypothetical protein.
  
     0.677
Bind_1816
KEGG: mex:Mext_2318 hypothetical protein.
  
     0.676
Bind_1632
PFAM: protein of unknown function DUF1214; KEGG: nha:Nham_1402 protein of unknown function DUF1214.
  
     0.671
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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