Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1257PFAM: regulatory protein TetR; KEGG: mex:Mext_3768 putative transcriptional regulator, TetR family. (246 aa)    
Predicted Functional Partners:
Bind_1076
PFAM: ABC-1 domain protein; KEGG: xau:Xaut_1153 ABC-1 domain protein.
  
     0.763
Bind_2108
KEGG: mex:Mext_1623 glycosyl transferase group 1.
  
     0.634
Bind_0051
KEGG: mex:Mext_1537 hypothetical protein.
  
     0.599
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.540
Bind_1791
PFAM: Domain of unknown function DUF1849; KEGG: mex:Mext_4720 domain of unknown function DUF1849.
  
     0.530
Bind_0008
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.509
Bind_1259
PFAM: Protein of unknown function DUF1790; KEGG: mex:Mext_3770 protein of unknown function DUF1790.
 
     0.501
Bind_0224
KEGG: mex:Mext_1588 hypothetical protein.
  
     0.480
Bind_0148
KEGG: bbt:BBta_1138 hypothetical protein.
  
     0.479
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.466
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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