Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1268KEGG: gdi:GDI0705 hypothetical protein. (461 aa)    
Predicted Functional Partners:
Bind_1077
KEGG: gbe:GbCGDNIH1_1436 hypothetical cytosolic protein.
  
     0.772
Bind_1995
KEGG: bra:BRADO5888 hypothetical protein.
  
     0.772
Bind_3388
KEGG: zmo:ZMO1458 hypothetical protein.
  
     0.769
Bind_1732
KEGG: gdi:GDI3686 hypothetical protein.
  
     0.754
Bind_3213
KEGG: gdi:GDI1670 hypothetical protein.
  
     0.741
Bind_2151
PFAM: outer membrane efflux protein; KEGG: gdi:GDI1515 putative type I secretion outer membrane protein, TolC.
  
     0.730
Bind_3305
TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA4387 possible ferrichrome-iron receptor.
  
   
 0.709
Bind_0123
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: gdi:GDI3850 secretion protein, HlyD-family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.706
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.684
bamD
DNA uptake lipoprotein-like protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.682
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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