Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Bind_1277Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH00344 probable transcriptional regulator protein, LysR family. (299 aa)    
Predicted Functional Partners:
Bind_2980
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpe:BP2857 putative LysR-family transcriptional regulator.
  
     0.717
Bind_2540
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3423 transcriptional regulator, LysR family.
  
     0.682
Bind_2962
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B3081 transcriptional regulator, LysR family.
  
     0.667
Bind_3456
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hne:HNE_1468 transcriptional regulator, LysR family.
  
     0.584
Bind_1276
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: atc:AGR_pAT_564 short chain dehydrogenase.
       0.529
Bind_2432
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xfa:XF1532 oxidative stress transcriptional regulator.
  
     0.451
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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