Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Bind_1328TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nwi:Nwi_2539 HAD-superfamily subfamily IIA hydrolase. (299 aa)    
Predicted Functional Partners:
Bind_1174
KEGG: ajs:Ajs_4230 metal dependent phosphohydrolase, HD region.
 
  
 0.678
Bind_0431
PFAM: Methyltransferase type 11; KEGG: mex:Mext_2509 methyltransferase type 11.
 
     0.635
Bind_1327
TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: xau:Xaut_1843 riboflavin biosynthesis protein RibF; Belongs to the ribF family.
       0.593
Bind_0893
PFAM: protein of unknown function DUF339; KEGG: mex:Mext_4162 protein of unknown function DUF339.
  
     0.564
Bind_1061
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_0013 putative transcriptional regulator.
  
     0.563
Bind_1037
PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: rpd:RPD_0904 2'-deoxycytidine 5'-triphosphate deaminase.
 
    0.556
atpF2
H+transporting two-sector ATPase B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity).
  
  
 0.554
Bind_3547
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpa:RPA4367 sensor histidine kinase.
  
 
   0.552
Bind_1329
KEGG: rpb:RPB_4107 hypothetical protein.
 
     0.551
atpF1
H+transporting two-sector ATPase B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
  
 0.498
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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