Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_1430PFAM: protein of unknown function DUF692; KEGG: bxe:Bxe_B0587 hypothetical protein; Belongs to the UPF0276 family. (307 aa)    
Predicted Functional Partners:
Bind_1431
KEGG: bxe:Bxe_B0585 hypothetical protein.
  
 0.985
Bind_1432
PFAM: DoxX family protein; KEGG: bxe:Bxe_B0584 hypothetical protein.
 
  
 0.966
Bind_1429
KEGG: bxe:Bxe_B0588 hypothetical protein.
 
  
 0.955
Bind_3129
KEGG: azc:AZC_3486 hypothetical protein.
  
 0.933
Bind_3131
KEGG: bbt:BBta_3391 hypothetical protein.
 
  
 0.898
Bind_3132
KEGG: azc:AZC_3484 hypothetical protein.
 
  
 0.898
Bind_3128
PFAM: DoxX family protein; KEGG: azc:AZC_3487 DoxX family protein.
 
  
 0.861
Bind_1433
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: nha:Nham_4645 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.615
Bind_1434
KEGG: nha:Nham_4644 hypothetical protein.
     
 0.605
Bind_2141
KEGG: rpc:RPC_2461 ATPase, E1-E2 type; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein.
   
    0.465
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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