Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1431KEGG: bxe:Bxe_B0585 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Bind_1430
PFAM: protein of unknown function DUF692; KEGG: bxe:Bxe_B0587 hypothetical protein; Belongs to the UPF0276 family.
  
 0.985
Bind_1432
PFAM: DoxX family protein; KEGG: bxe:Bxe_B0584 hypothetical protein.
 
  
 0.967
Bind_1429
KEGG: bxe:Bxe_B0588 hypothetical protein.
 
  
 0.938
Bind_3130
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: azc:AZC_3485 hypothetical protein.
  
 0.935
Bind_3128
PFAM: DoxX family protein; KEGG: azc:AZC_3487 DoxX family protein.
 
  
 0.862
Bind_3131
KEGG: bbt:BBta_3391 hypothetical protein.
 
  
 0.860
Bind_3132
KEGG: azc:AZC_3484 hypothetical protein.
 
  
 0.860
Bind_1433
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: nha:Nham_4645 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.633
Bind_1434
KEGG: nha:Nham_4644 hypothetical protein.
     
 0.606
Bind_3134
PFAM: protein of unknown function DUF1109; KEGG: rpe:RPE_1945 protein of unknown function DUF1109.
 
   
 0.459
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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