Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1443PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: nwi:Nwi_2276 Fe-S oxidoreductase. (531 aa)    
Predicted Functional Partners:
Bind_3156
KEGG: mex:Mext_1944 squalene-hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
   
 0.549
Bind_0899
KEGG: dar:Daro_2929 hypothetical protein.
  
     0.541
Bind_2753
KEGG: dar:Daro_2929 hypothetical protein.
  
     0.530
Bind_3430
KEGG: rpc:RPC_2525 TRAP transporter solute receptor, TAXI family.
  
     0.527
ispDF
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
     
 0.492
Bind_3158
TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein; KEGG: reh:H16_B2170 predicted Fe-S oxidoreductase.
 
  
 0.477
Bind_3398
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.473
Bind_3153
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: bja:blr3001 hypothetical protein.
 
  
 0.470
Bind_3155
TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_1943 squalene-associated FAD-dependent desaturase.
 
     0.456
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
       0.430
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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