Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1482PFAM: Protein of unknown function DUF1778; KEGG: rpa:RPA3583 hypothetical protein. (113 aa)    
Predicted Functional Partners:
Bind_1497
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: mex:Mext_1503 putative DNA-binding protein.
  
   
 0.417
Bind_1481
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: esa:ESA_01963 hypothetical protein.
       0.414
Bind_0303
PFAM: GCN5-related N-acetyltransferase; KEGG: rle:pRL110290 putative acetyltransferase.
   
 
 0.405
Bind_0584
PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA0410 GCN5-related N-acetyltransferase.
   
 
 0.405
Bind_1053
PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll0798 putative acetyltransferase.
   
 
 0.405
Bind_1082
PFAM: GCN5-related N-acetyltransferase; KEGG: mes:Meso_0956 GCN5-related N-acetyltransferase.
   
 
 0.405
Bind_1149
KEGG: net:Neut_1100 hypothetical protein.
   
 
 0.405
Bind_1914
PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_2088 GCN5-related N-acetyltransferase.
   
 
 0.405
Bind_2278
PFAM: GCN5-related N-acetyltransferase; KEGG: cak:Caul_0180 GCN5-related N-acetyltransferase.
   
 
 0.405
Bind_2940
KEGG: lic:LIC12825 hypothetical protein.
   
 
 0.405
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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