Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Bind_1513PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_0831 hypothetical protein. (390 aa)    
Predicted Functional Partners:
Bind_1781
PFAM: 2OG-Fe(II) oxygenase; KEGG: hne:HNE_1522 alkylated DNA repair protein AlkB.
  
     0.548
Bind_2838
PFAM: Carbohydrate-selective porin OprB; KEGG: rso:RSp1632 putative porin B precursor outer (glucose porin) transmembrane protein.
  
     0.528
Bind_3070
PFAM: Carbohydrate-selective porin OprB; KEGG: rso:RSp1632 putative porin B precursor outer (glucose porin) transmembrane protein.
  
     0.528
Bind_2860
PFAM: Carbohydrate-selective porin OprB; KEGG: psb:Psyr_1117 carbohydrate-selective porin OprB.
  
     0.525
Bind_1514
PFAM: CinA domain protein; KEGG: mmr:Mmar10_1438 CinA domain protein; Belongs to the CinA family.
       0.505
Bind_1515
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ava:Ava_3671 haloacid dehalogenase-like hydrolase.
       0.505
Bind_1401
KEGG: mex:Mext_4756 fusaric acid resistance protein conserved region.
  
     0.481
Bind_2320
PFAM: Fusaric acid resistance protein conserved region; KEGG: azc:AZC_1076 hypothetical protein.
  
     0.480
Bind_0134
PFAM: Fusaric acid resistance protein conserved region; KEGG: bra:BRADO4669 putative efflux transporter permease; putative fusaric acid resistance pump.
  
     0.465
Bind_2500
PFAM: major facilitator superfamily MFS_1; KEGG: gox:GOX2104 putative transport protein.
  
     0.454
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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