Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1522PFAM: Chromate transporter; KEGG: reu:Reut_A2355 chromate transporter. (188 aa)    
Predicted Functional Partners:
Bind_1523
PFAM: Chromate transporter; KEGG: rso:RSc0980 probable transmembrane protein.
 
     0.963
Bind_1521
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: mex:Mext_2823 sigma-54 factor interaction domain-containing protein.
       0.691
Bind_0647
PFAM: Chromate transporter; KEGG: ana:all1110 chromate transport protein.
 
     0.606
Bind_2525
KEGG: bch:Bcen2424_5953 hypothetical protein.
 
   
 0.603
Bind_2524
KEGG: dvu:DVUA0094 ChrB protein.
 
   
 0.558
Bind_1524
PFAM: aminotransferase class IV; KEGG: mes:Meso_1614 aminotransferase, class IV.
       0.536
Bind_1520
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: mex:Mext_2822 PAS sensor protein.
       0.487
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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