Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_1581Hypothetical protein; KEGG: rpe:RPE_2658 prepilin-type cleavage/methylation-like protein. (255 aa)    
Predicted Functional Partners:
Bind_1582
Hypothetical protein; KEGG: rpe:RPE_2659 prepilin-type cleavage/methylation-like protein.
     
 0.742
Bind_1583
KEGG: rpe:RPE_2660 putative general secretion pathway protein H precursor.
     
 0.742
Bind_1584
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rpe:RPE_2661 general secretion pathway protein G.
     
 0.742
Bind_1585
PFAM: type II secretion system protein; KEGG: rpe:RPE_2662 type II secretion system protein.
     
 0.603
Bind_1586
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: rpe:RPE_2663 type II secretion system protein E.
     
 0.442
Bind_1580
Putative signal-transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: mex:Mext_2262 CBS domain containing protein.
       0.412
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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