Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_1590PFAM: Fimbrial assembly family protein; KEGG: rpe:RPE_2666 fimbrial assembly family protein. (355 aa)    
Predicted Functional Partners:
Bind_1588
PFAM: peptidase A24A prepilin type IV; KEGG: rpe:RPE_2668 general secretion pathway protein O.
 
  
 0.955
Bind_1589
KEGG: rpe:RPE_2667 hypothetical protein.
 
     0.954
Bind_1587
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rpe:RPE_2669 general secretion pathway protein D.
 
   
 0.946
Bind_1586
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: rpe:RPE_2663 type II secretion system protein E.
 
 
 0.936
Bind_1585
PFAM: type II secretion system protein; KEGG: rpe:RPE_2662 type II secretion system protein.
 
 
 
 0.900
Bind_1592
KEGG: bja:bll6012 hypothetical protein.
     
 0.818
Bind_3067
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rpe:RPE_2669 general secretion pathway protein D.
 
   
 0.798
Bind_1591
KEGG: rpe:RPE_2665 hypothetical protein.
       0.773
Bind_1584
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rpe:RPE_2661 general secretion pathway protein G.
 
  
 0.635
Bind_2360
Hypothetical protein; KEGG: pca:Pcar_0522 ATPase, AAA superfamily.
  
     0.593
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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