Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_1591KEGG: rpe:RPE_2665 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Bind_1592
KEGG: bja:bll6012 hypothetical protein.
       0.787
Bind_1589
KEGG: rpe:RPE_2667 hypothetical protein.
       0.786
Bind_1590
PFAM: Fimbrial assembly family protein; KEGG: rpe:RPE_2666 fimbrial assembly family protein.
       0.773
Bind_1588
PFAM: peptidase A24A prepilin type IV; KEGG: rpe:RPE_2668 general secretion pathway protein O.
       0.767
Bind_1587
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rpe:RPE_2669 general secretion pathway protein D.
       0.750
Bind_1593
PFAM: isochorismatase hydrolase; KEGG: bbt:BBta_2415 nicotinamidase/pyrazinamidase.
       0.550
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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