Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_1611PFAM: protein of unknown function DUF983; KEGG: smd:Smed_1973 protein of unknown function DUF983. (137 aa)    
Predicted Functional Partners:
Bind_3107
KEGG: bja:bll0688 hypothetical protein.
  
     0.719
Bind_3382
KEGG: mex:Mext_2051 ubiquinol-cytochrome c chaperone.
  
     0.527
Bind_0723
PFAM: Surfeit locus 1 family protein; KEGG: azc:AZC_2953 putative surfeit locus protein.
 
     0.508
Bind_3038
PFAM: protein of unknown function DUF1153; KEGG: rpe:RPE_0964 protein of unknown function DUF1153.
  
     0.467
Bind_1724
KEGG: nwi:Nwi_1435 hypothetical protein.
  
     0.453
ctaG
Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.408
Bind_1529
Transketolase central region; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
     0.402
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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