Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1625KEGG: bra:BRADO6543 conserved hypothetical protein; putative signal peptide. (199 aa)    
Predicted Functional Partners:
Bind_3213
KEGG: gdi:GDI1670 hypothetical protein.
  
 
   0.754
Bind_0137
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20.
  
    0.692
Bind_2129
KEGG: atc:AGR_L_1520 hypothetical protein.
  
     0.663
Bind_3388
KEGG: zmo:ZMO1458 hypothetical protein.
  
    0.584
Bind_1268
KEGG: gdi:GDI0705 hypothetical protein.
  
    0.575
Bind_1077
KEGG: gbe:GbCGDNIH1_1436 hypothetical cytosolic protein.
  
    0.523
Bind_1995
KEGG: bra:BRADO5888 hypothetical protein.
  
    0.519
Bind_1732
KEGG: gdi:GDI3686 hypothetical protein.
  
     0.511
Bind_1401
KEGG: mex:Mext_4756 fusaric acid resistance protein conserved region.
  
     0.502
Bind_0603
KEGG: gox:GOX1434 hypothetical protein.
  
     0.501
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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