Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_1631PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rle:pRL70183 hypothetical protein. (798 aa)    
Predicted Functional Partners:
Bind_2206
PFAM: sulfatase; KEGG: xau:Xaut_2420 sulfatase.
 
     0.769
Bind_1946
PFAM: sulfatase; KEGG: bja:bll5074 putative arylsulfatase.
 
     0.764
Bind_1808
PFAM: Ion transport 2 domain protein; KEGG: ppd:Ppro_0413 ion transport 2 domain protein.
 
     0.607
Bind_1447
PFAM: Choloylglycine hydrolase; KEGG: oan:Oant_1703 penicillin amidase.
  
     0.509
Bind_0555
PFAM: sulfatase; KEGG: nar:Saro_0474 sulfatase.
 
     0.505
Bind_1632
PFAM: protein of unknown function DUF1214; KEGG: nha:Nham_1402 protein of unknown function DUF1214.
       0.479
Bind_1633
KEGG: mex:Mext_0926 hypothetical protein.
       0.479
Bind_2755
KEGG: nha:Nham_0882 hypothetical protein.
  
     0.445
Bind_1920
PFAM: Choloylglycine hydrolase; KEGG: dac:Daci_3467 choloylglycine hydrolase.
  
     0.428
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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