Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1633KEGG: mex:Mext_0926 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Bind_1632
PFAM: protein of unknown function DUF1214; KEGG: nha:Nham_1402 protein of unknown function DUF1214.
 
     0.949
Bind_3675
KEGG: xau:Xaut_4721 hypothetical protein.
  
     0.768
Bind_0659
KEGG: xau:Xaut_2732 putative exported protein of unknown function.
  
     0.764
Bind_0880
KEGG: azc:AZC_2357 hypothetical protein.
  
     0.762
Bind_1008
KEGG: mex:Mext_2327 hypothetical protein.
  
     0.761
Bind_0013
KEGG: mex:Mext_2985 hypothetical protein.
  
     0.757
Bind_3021
PFAM: transcription activator effector binding; KEGG: bra:BRADO0382 conserved hypothetical protein; putative secreted protein.
  
     0.754
Bind_3592
KEGG: mex:Mext_4396 hypothetical protein.
  
     0.751
Bind_1107
KEGG: mex:Mext_4294 hypothetical protein.
  
     0.744
Bind_3406
KEGG: mex:Mext_2511 hypothetical protein.
  
     0.743
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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