STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1680KEGG: bbt:BBta_6628 hypothetical protein. (103 aa)    
Predicted Functional Partners:
Bind_1681
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mex:Mext_2943 putative phage-related transcriptional regulator.
     
 0.777
Bind_1497
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: mex:Mext_1503 putative DNA-binding protein.
   
 
 0.421
Bind_3174
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mex:Mext_1487 helix-turn-helix domain protein.
   
 
 0.421
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.