Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_1717PFAM: protein of unknown function DUF490; KEGG: xau:Xaut_4225 protein of unknown function DUF490. (1423 aa)    
Predicted Functional Partners:
Bind_1716
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: xau:Xaut_4224 surface antigen (D15).
 
 
 0.996
Bind_0356
KEGG: mex:Mext_1764 hypothetical protein.
  
     0.601
Bind_0193
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
     0.575
Bind_0880
KEGG: azc:AZC_2357 hypothetical protein.
  
     0.561
Bind_0196
KEGG: bxe:Bxe_B2118 hypothetical protein.
  
     0.542
Bind_1562
KEGG: azc:AZC_2831 hypothetical protein.
  
     0.520
Bind_0194
PFAM: Fusaric acid resistance protein conserved region; KEGG: bxe:Bxe_B2120 conserved hypothetical membrane protein, putative efflux pump.
  
     0.517
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
 
     0.470
Bind_1008
KEGG: mex:Mext_2327 hypothetical protein.
  
     0.470
Bind_2407
KEGG: azc:AZC_1593 hypothetical protein.
  
     0.469
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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