STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1720Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: atc:AGR_L_843 operon regulator. (331 aa)    
Predicted Functional Partners:
Bind_2463
PFAM: extracellular solute-binding protein family 1; KEGG: rle:RL4218 putative mannitol-binding component of ABC transporter.
 
     0.682
Bind_2462
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4217 putative mannitol transmembrane permease component of ABC transporter.
 
   
 0.641
Bind_2461
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4216 putative mannitol transmembrane permease component of ABC transporter.
 
   
 0.622
Bind_2459
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: atc:AGR_L_830 mannitol 2-dehydrogenase (MDH).
 
     0.609
Bind_1719
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mag:amb0238 transcriptional regulator.
 
     0.516
Bind_3468
KEGG: xau:Xaut_3075 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.437
Bind_1721
Hydroxypyruvate reductase; PFAM: MOFRL domain protein; KEGG: gbe:GbCGDNIH1_0364 glycerate dehydrogenase.
       0.425
Bind_1722
PFAM: lipolytic protein G-D-S-L family; KEGG: ava:Ava_3904 lipolytic enzyme, G-D-S-L.
       0.425
Bind_1718
KEGG: pla:Plav_0662 putative DNA topology modulation protein FlaR.
       0.415
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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