Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1781PFAM: 2OG-Fe(II) oxygenase; KEGG: hne:HNE_1522 alkylated DNA repair protein AlkB. (232 aa)    
Predicted Functional Partners:
Bind_2118
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pde:Pden_4239 methylated-DNA--protein-cysteine methyltransferase.
 
  
 0.697
Bind_1513
PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_0831 hypothetical protein.
  
     0.548
Bind_2946
KEGG: nfa:nfa53680 putative methylated-DNA:protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding.
  
  
 0.447
Bind_1780
PFAM: protein of unknown function UPF0153; KEGG: mca:MCA0219 hypothetical protein.
       0.437
Bind_2562
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sme:SMa1885 putative membrane efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.418
Bind_2561
PFAM: acriflavin resistance protein; KEGG: ret:RHE_CH00528 probable cation/multidrug efflux transport protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.403
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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