Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1783PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_2647 ErfK/YbiS/YcfS/YnhG family protein. (199 aa)    
Predicted Functional Partners:
Bind_1670
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: bra:BRADO4549 putative D-alanyl-D-alanine carboxypeptidase (peptidase S11)(dd-carboxypeptidase); Belongs to the peptidase S11 family.
 
  
 0.624
Bind_0731
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein.
  
     0.600
Bind_2411
PFAM: conserved hypothetical protein; KEGG: mes:Meso_1416 conserved hypothetical protein 1620.
  
     0.574
Bind_1537
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: mex:Mext_2917 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.515
Bind_2917
PFAM: protein of unknown function DUF949; KEGG: xau:Xaut_0510 protein of unknown function DUF949.
 
  
 0.501
Bind_2410
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: rpc:RPC_4270 protein of unknown function DUF463, YcjX-like protein.
  
     0.488
Bind_1816
KEGG: mex:Mext_2318 hypothetical protein.
  
     0.465
Bind_0450
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: xau:Xaut_3098 peptidase U6 penicillin-insensitive murein endopeptidase.
  
     0.445
Bind_0542
PFAM: protein of unknown function DUF949; KEGG: mex:Mext_4457 protein of unknown function DUF949.
 
  
 0.441
Bind_2927
KEGG: xau:Xaut_2218 hypothetical protein.
  
     0.407
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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