STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1789KEGG: mex:Mext_4236 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Bind_1790
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mex:Mext_4237 enoyl-CoA hydratase/isomerase.
       0.784
Bind_2193
PFAM: Invasion associated locus B family protein; KEGG: mex:Mext_3384 invasion associated locus B family protein.
  
     0.761
Bind_0671
PFAM: NUDIX hydrolase; KEGG: bbt:BBta_6065 hypothetical protein.
  
     0.756
Bind_1635
KEGG: mex:Mext_4416 hypothetical protein.
  
     0.746
Bind_2400
Periplasmic protein-like protein; KEGG: bbt:BBta_5203 hypothetical protein.
  
     0.744
Bind_1791
PFAM: Domain of unknown function DUF1849; KEGG: mex:Mext_4720 domain of unknown function DUF1849.
 
     0.731
Bind_0659
KEGG: xau:Xaut_2732 putative exported protein of unknown function.
  
     0.711
Bind_3675
KEGG: xau:Xaut_4721 hypothetical protein.
  
     0.707
Bind_1107
KEGG: mex:Mext_4294 hypothetical protein.
  
     0.702
Bind_0224
KEGG: mex:Mext_1588 hypothetical protein.
  
     0.691
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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