Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1817KEGG: cph:Cpha266_2437 hypothetical protein. (821 aa)    
Predicted Functional Partners:
Bind_1816
KEGG: mex:Mext_2318 hypothetical protein.
 
     0.847
Bind_0529
TIGRFAM: TonB family protein; KEGG: pfo:Pfl_3737 TonB-like.
  
     0.761
Bind_2076
KEGG: mex:Mext_4786 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
 
    0.749
Bind_2854
TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like.
  
     0.743
Bind_0592
KEGG: ana:alr0587 unknown protein.
  
     0.727
Bind_0593
Permease-like protein; KEGG: mag:amb3714 predicted permease.
  
     0.720
Bind_2400
Periplasmic protein-like protein; KEGG: bbt:BBta_5203 hypothetical protein.
  
     0.686
Bind_2073
PFAM: TonB-dependent receptor plug; KEGG: sat:SYN_01058 TonB dependent receptor family.
  
     0.646
Bind_0644
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein; KEGG: aba:Acid345_4695 nuclease-related protein.
  
     0.615
Bind_0927
KEGG: rpc:RPC_3143 hypothetical protein.
  
     0.601
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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