Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1886Hypothetical protein. (297 aa)    
Predicted Functional Partners:
Bind_1887
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: stp:Strop_3509 regulatory protein, ArsR.
       0.497
Bind_1888
Hypothetical protein.
       0.497
Bind_1885
PFAM: malate synthase; KEGG: aeh:Mlg_1646 malate synthase G.
       0.458
Bind_1889
KEGG: bch:Bcen2424_5421 hypothetical protein.
       0.431
Bind_1890
KEGG: pol:Bpro_0110 hypothetical protein.
       0.431
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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