Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1892PFAM: regulatory protein TetR; KEGG: kra:Krad_0136 transcriptional regulator, TetR family. (243 aa)    
Predicted Functional Partners:
Bind_1893
NmrA family protein; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: scl:sce1557 hypothetical protein.
 
     0.770
Bind_0033
PFAM: regulatory protein TetR; KEGG: kra:Krad_2790 transcriptional regulator, TetR family.
  
     0.599
Bind_2504
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mlo:mlr2184 RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.508
Bind_1891
PFAM: carbonic anhydrase; KEGG: noc:Noc_1341 carbonic anhydrase.
       0.460
Bind_3528
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rle:RL2334 putative AraC family transcriptional regulator.
  
     0.454
Bind_0265
PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: pst:PSPTO_0819 hypothetical protein.
  
     0.424
Bind_0017
PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_C7473 transcriptional regulator, TetR family.
  
     0.412
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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