Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_1902PFAM: protein of unknown function DUF535; KEGG: esa:ESA_02461 hypothetical protein. (318 aa)    
Predicted Functional Partners:
Bind_0782
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein.
  
     0.754
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
  
     0.749
Bind_1189
KEGG: rpd:RPD_0468 hypothetical protein.
  
     0.741
Bind_2770
KEGG: lmo:lmo1968 hypothetical protein.
  
     0.738
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
  
     0.735
Bind_0384
PFAM: filamentation induced by cAMP protein Fic; KEGG: bhe:BH13400 putative cell filamentation protein.
  
     0.727
Bind_0448
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO5242 hypothetical protein; putative SAM-dependent methyltransferase domain.
  
     0.726
Bind_2727
KEGG: ngo:NGO0506 hypothetical protein, putative phage associated protein.
  
     0.717
Bind_0864
KEGG: bur:Bcep18194_C6733 hypothetical protein.
  
     0.698
Bind_3640
PFAM: cytochrome c class I; SMART: extracellular solute-binding protein family 3; KEGG: bam:Bamb_6161 cytochrome c, class I.
  
     0.684
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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