Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1905PFAM: ferredoxin; KEGG: pna:Pnap_1587 ferredoxin. (100 aa)    
Predicted Functional Partners:
Bind_2346
PFAM: ferredoxin; KEGG: rpa:RPA3956 ferredoxin.
  
  
  0.950
Bind_2488
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ret:RHE_CH02643 ferredoxin reductase protein.
  
 
 0.908
Bind_2850
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ccr:CC_3525 ferredoxin reductase.
  
 
 0.908
Bind_0539
PFAM: ferredoxin; KEGG: mlo:msl0793 ferredoxin.
     
  0.900
Bind_1575
PFAM: nitrogen-fixing NifU domain protein; KEGG: rpc:RPC_3115 nitrogen-fixing NifU-like.
  
 0.802
Bind_1113
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mex:Mext_1947 beta-ketoacyl synthase.
   
 0.761
Bind_0398
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azc:AZC_3416 HesB/YadR/YfhF family protein; Belongs to the HesB/IscA family.
 
 0.739
Bind_2401
KEGG: bra:BRADO5430 hypothetical protein.
  
     0.715
Bind_0472
PFAM: response regulator receiver; KEGG: bbt:BBta_5880 putative transcriptional regulatory protein (protein CheY).
  
     0.674
Bind_0411
KEGG: pna:Pnap_2347 hypothetical protein.
  
     0.673
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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