Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1912PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA3293 hypothetical protein. (578 aa)    
Predicted Functional Partners:
Bind_2798
PFAM: peptidase S1 and S6 chymotrypsin/Hap; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bra:BRADO4942 hypothetical protein; putative CbxX/CfqX family protein (N-term) and peptidase (C-term).
 
 
 0.812
Bind_1911
PFAM: conserved hypothetical protein; KEGG: rpa:RPA2004 hypothetical protein; Belongs to the LOG family.
       0.773
Bind_1910
PFAM: Peptidoglycan-binding LysM; KEGG: bbt:BBta_3954 hypothetical protein.
 
     0.598
Bind_3065
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpe:RPE_2672 tetratricopeptide TPR_2 repeat protein.
 
 
 
 0.575
Bind_0755
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein.
 
 
 
 0.565
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.530
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.524
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
  
 
 0.516
Bind_2514
Putative transcriptional regulator, TetR family; KEGG: gdi:GDI0537 hypothetical protein.
  
     0.506
Bind_2360
Hypothetical protein; KEGG: pca:Pcar_0522 ATPase, AAA superfamily.
 
     0.495
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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