Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_1920PFAM: Choloylglycine hydrolase; KEGG: dac:Daci_3467 choloylglycine hydrolase. (356 aa)    
Predicted Functional Partners:
Bind_1918
KEGG: tcx:Tcr_0335 hypothetical protein.
       0.515
Bind_1919
Hypothetical protein.
       0.515
Bind_1917
Hypothetical protein; KEGG: tpe:Tpen_0017 nucleoside 2-deoxyribosyltransferase.
       0.508
Bind_1631
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rle:pRL70183 hypothetical protein.
  
     0.428
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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