Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_1945PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpd:RPD_1639 tetratricopeptide TPR_2. (828 aa)    
Predicted Functional Partners:
Bind_1946
PFAM: sulfatase; KEGG: bja:bll5074 putative arylsulfatase.
 
     0.877
Bind_2206
PFAM: sulfatase; KEGG: xau:Xaut_2420 sulfatase.
 
     0.746
Bind_0555
PFAM: sulfatase; KEGG: nar:Saro_0474 sulfatase.
  
     0.571
Bind_2404
KEGG: mex:Mext_0531 hypothetical protein.
  
     0.548
Bind_1867
KEGG: pha:PSHAa1036 hypothetical protein; membrane protein.
  
     0.516
Bind_1808
PFAM: Ion transport 2 domain protein; KEGG: ppd:Ppro_0413 ion transport 2 domain protein.
 
    0.438
parC
DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
       0.434
Bind_0755
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein.
  
 
 0.421
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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