Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1949KEGG: bbt:BBta_5892 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Bind_2402
KEGG: bra:BRADO5401 conserved hypothetical protein (TPR repeat).
  
    0.775
Bind_1175
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mca:MCA0262 ATPase, AAA family.
  
     0.774
Bind_0472
PFAM: response regulator receiver; KEGG: bbt:BBta_5880 putative transcriptional regulatory protein (protein CheY).
  
     0.763
Bind_0399
KEGG: xau:Xaut_0114 hypothetical protein.
  
    0.758
Bind_0601
KEGG: xau:Xaut_0114 hypothetical protein.
  
    0.748
Bind_2401
KEGG: bra:BRADO5430 hypothetical protein.
  
     0.739
Bind_3575
PFAM: amine oxidase; KEGG: mca:MCA2837 amine oxidase family, flavin-containing protein.
  
     0.733
Bind_1115
PFAM: Glutathione S-transferase domain; KEGG: bra:BRADO1844 putative glutathione S-transferase.
 
     0.732
Bind_0077
KEGG: xau:Xaut_1175 hypothetical protein.
  
     0.727
Bind_0470
PFAM: Rhodanese domain protein; KEGG: bbt:BBta_2171 hypothetical protein.
  
    0.726
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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