STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1960TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mpt:Mpe_A1565 hypothetical protein. (405 aa)    
Predicted Functional Partners:
Bind_1381
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mlo:mlr0937 poly-beta-hydroxybutyrate synthase.
 
  
 0.958
Bind_2098
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: cak:Caul_2971 poly-beta-hydroxybutyrate polymerase domain protein.
 
  
 0.956
Bind_2201
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pde:Pden_5103 poly-beta-hydroxybutyrate polymerase domain protein.
 
  
 0.956
Bind_3542
KEGG: pna:Pnap_3987 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane.
  
  
  0.929
Bind_2099
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: xau:Xaut_0368 PHB de-polymerase domain protein.
  
  
 
0.918
Bind_3323
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mlo:mll4552 intracellular PHB depolymerase.
  
  
 
0.907
Bind_1959
PFAM: Glutathione S-transferase domain; KEGG: reu:Reut_A0763 glutathione S-transferase, N-terminal.
       0.516
Bind_0428
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: bja:blr0227 hypothetical protein.
 
   
 0.488
Bind_2696
TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_1887 3-hydroxybutyrate dehydrogenase.
  
   
 0.453
Bind_1872
PFAM: alpha/beta hydrolase fold; KEGG: xau:Xaut_1013 alpha/beta hydrolase fold.
  
     0.421
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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