STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1968PFAM: response regulator receiver; ANTAR domain protein; KEGG: pat:Patl_2529 response regulator receiver and ANTAR domain protein. (193 aa)    
Predicted Functional Partners:
Bind_1967
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic component-like protein; KEGG: cyb:CYB_0037 nitrate ABC transporter, ATP-binding protein NtrC.
 
  
 0.958
Bind_1969
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; KEGG: mfa:Mfla_0317 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.903
Bind_1970
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; nitrite reductase [NAD(P)H], small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ppf:Pput_4015 nitrite reductase (NAD(P)H), large subunit.
 
  
 0.870
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
   
  
 0.760
Bind_0976
TIGRFAM: urea ABC transporter, urea binding protein; KEGG: azc:AZC_4106 amide-UreA binding protein precursor.
  
 
 0.751
Bind_2628
KEGG: xau:Xaut_1352 extracellular ligand-binding receptor.
  
 
 0.751
Bind_3284
PFAM: Extracellular ligand-binding receptor; KEGG: nha:Nham_0148 extracellular ligand-binding receptor.
  
 
 0.751
Bind_1971
PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA1213 nitrate transporter.
 
  
 0.658
Bind_0267
uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
  
  
 0.588
Bind_0707
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; KEGG: rpa:RPA3316 possible chemotaxis CheB/CheR fusion protein; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; HWE histidine kinase; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
     
 0.564
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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