STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1973TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein; KEGG: gdi:GDI0494 putative transcriptional regulator. (150 aa)    
Predicted Functional Partners:
Bind_1972
PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gdi:GDI0493 putative flavohemoprotein; Belongs to the globin family.
 
   
 0.899
Bind_1376
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mlo:mlr1674 hypothetical protein.
  
   
 0.647
Bind_1974
KEGG: rpd:RPD_0591 DNA helicase, putative.
  
    0.536
Bind_0097
PFAM: aminotransferase class V; KEGG: bja:blr4338 cysteine desulfurase.
  
  
 0.430
Bind_0403
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mca:MCA0212 cysteine desulfurase.
  
  
 0.430
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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