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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_1995KEGG: bra:BRADO5888 hypothetical protein. (572 aa)    
Predicted Functional Partners:
Bind_1268
KEGG: gdi:GDI0705 hypothetical protein.
  
   
 0.777
Bind_1732
KEGG: gdi:GDI3686 hypothetical protein.
  
     0.747
Bind_2151
PFAM: outer membrane efflux protein; KEGG: gdi:GDI1515 putative type I secretion outer membrane protein, TolC.
  
     0.724
Bind_3213
KEGG: gdi:GDI1670 hypothetical protein.
  
     0.724
Bind_3305
TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA4387 possible ferrichrome-iron receptor.
  
     0.719
Bind_3661
KEGG: gdi:GDI0639 hypothetical protein.
  
     0.688
Bind_0118
KEGG: gdi:GDI0639 hypothetical protein.
  
     0.669
Bind_1183
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX2077 ferric siderophore receptor.
  
    0.653
Bind_3256
KEGG: gox:GOX0013 hypothetical protein.
  
     0.653
Bind_0366
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX2077 ferric siderophore receptor.
  
    0.606
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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