Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2092PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_0454 TonB-dependent outer membrane receptor for cobalamin and Fe transport. (670 aa)    
Predicted Functional Partners:
Bind_2093
KEGG: fre:Franean1_3545 hypothetical protein.
       0.798
Bind_2094
KEGG: ret:RHE_CH02620 hypothetical protein.
       0.708
Bind_2854
TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like.
 
 
 
 0.627
Bind_2327
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gvi:glr0349 ferrichrome-iron receptor.
  
   
 0.583
Bind_1123
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
   
 0.564
Bind_0233
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: nwi:Nwi_2038 TonB like protein.
 
 
 
 0.541
Bind_0271
TolA protein; KEGG: bcs:BCAN_A1737 TolA protein.
    
   0.526
Bind_2686
KEGG: mex:Mext_0632 putative chemotaxis protein precursor.
    
   0.526
Bind_3211
KEGG: aba:Acid345_1413 hypothetical protein.
    
   0.526
Bind_3212
KEGG: aba:Acid345_1413 hypothetical protein.
    
   0.526
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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