Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2098PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: cak:Caul_2971 poly-beta-hydroxybutyrate polymerase domain protein. (588 aa)    
Predicted Functional Partners:
Bind_2099
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: xau:Xaut_0368 PHB de-polymerase domain protein.
 
  
 0.990
Bind_3323
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mlo:mll4552 intracellular PHB depolymerase.
 
  
 0.957
Bind_1960
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mpt:Mpe_A1565 hypothetical protein.
 
  
 0.956
Bind_0426
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpd:RPD_0305 acetoacetyl-CoA reductase.
  
 
 0.944
Bind_1381
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mlo:mlr0937 poly-beta-hydroxybutyrate synthase.
  
  
 
0.912
Bind_2201
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pde:Pden_5103 poly-beta-hydroxybutyrate polymerase domain protein.
  
  
 
0.904
Bind_0428
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: bja:blr0227 hypothetical protein.
 
   
 0.735
dinB
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.603
Bind_2202
PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: azc:AZC_2420 phosphate acetyl/butyryltransferase family protein.
  
 0.543
Bind_2453
PFAM: phosphate acetyl/butaryl transferase; KEGG: bch:Bcen2424_4872 phosphate acetyltransferase.
  
 0.470
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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