Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2108KEGG: mex:Mext_1623 glycosyl transferase group 1. (444 aa)    
Predicted Functional Partners:
Bind_1257
PFAM: regulatory protein TetR; KEGG: mex:Mext_3768 putative transcriptional regulator, TetR family.
  
     0.634
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.631
Bind_2939
PFAM: conserved hypothetical protein; KEGG: mex:Mext_2126 hypothetical protein.
  
     0.537
Bind_1076
PFAM: ABC-1 domain protein; KEGG: xau:Xaut_1153 ABC-1 domain protein.
  
    0.504
Bind_1061
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: azc:AZC_0013 putative transcriptional regulator.
  
     0.498
Bind_2174
TIGRFAM: double-strand break repair protein AddB; KEGG: mex:Mext_4439 double-strand break repair protein AddB.
  
     0.473
Bind_2076
KEGG: mex:Mext_4786 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
 
  
 0.465
Bind_2896
TIGRFAM: methyltransferase FkbM family; KEGG: mex:Mext_0376 methyltransferase FkbM family.
  
     0.427
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.422
Bind_0755
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein.
 
 
 0.414
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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