Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Bind_2115Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: mex:Mext_4103 regulatory protein TetR. (213 aa)    
Predicted Functional Partners:
Bind_2116
PFAM: Pirin domain protein; KEGG: cak:Caul_0818 pirin domain protein; Belongs to the pirin family.
       0.645
Bind_2113
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eli:ELI_11040 ABC transporter, ATP-binding protein.
   
   0.546
Bind_2114
PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease protein, putative.
       0.528
Bind_2112
PFAM: secretion protein HlyD family protein; KEGG: mca:MCA1810 hypothetical protein.
       0.525
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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